An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing

Devon Kohler, Mateusz Staniak, Fengchao Yu, Alexey I. Nesvizhskii, Olga Vitek

Published: 2024-05-19 DOI: 10.1038/s41596-024-01000-3

statistical analysis

proteomics

DIA experiments

MSstats

FragPipe

AI 解读

Extended

Supplementary information

Supplementary Information

Supplementary Methods 1 and 2, Figs. 1–9 and Tables 1 and 2

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An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing

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Supplementary Information

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